Use the documentation links in the right-sidebar to navigate this documentation, and contact our Google group for technical support. Trinity -seqType fq -left reads_1.fq -right reads_2.fq -CPU 6 -max_memory 20Gįind assembled transcripts as: 'trinity_out_dir/Trinity.fasta'

How can I run this in parallel on a computing grid?.How do I identify the specific reads that were incorporated into the transcript assemblies?.How do I use reads I downloaded from SRA.There are too many transcripts! What do I do?.Defining a reduced 'best' transcript set and TSA submission.Miscellaneous additional functionality that may be of interest.Gene Ontology term functional category enrichments.Identifying Sequence Polymorphisms or Variants.Sample Specificity Analysis in Many Sample Comparisons.Differential Transcript or Gene Expression.Examining Resource Usage at the End of a Trinity Run.Monitoring Progress During a Trinity Run.Trinity process and resource monitoring.Genome Guided Trinity Transcriptome Assembly.Accessing Trinity on Publicly Available Compute Resources.

Free for apple instal Trinity Fusion